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1983
W. J. Jones, Leigh, J. A., Mayer, F., Woese, C. R., and Wolfe, R. S., “Methanococcus jannaschii sp. nov., an extremely thermophilic methanogen from a submarine hydrothermal vent”, Archives of Microbiology, vol. 136, pp. 254–261, 1983.
1989
W. J. Jones, Stugard, C. E., and Jannasch, H. W., “Comparison of thermophilic methanogens from submarine hydrothermal vents”, Archives of Microbiology, vol. 151, pp. 314–318., 1989.
2006
W. J. Jones, Won, Y. - J., A Y Maas, P., Smith, P. J., Lutz, R. A., and Vrijenhoek, R. C., “Evolution of habitat use by deep-sea mussels”, Marine Biology, vol. 148, pp. 841–851, 2006.
S. B. Johnson, Young, C. R., Jones, W. J., Waren, A., and Vrijenhoek, R. C., “Migration, isolation, and speciation of hydrothermal vent limpets (Gastropoda ; Lepetodrilidae) across the Blanco Transform Fault”, Biological Bulletin, vol. 210, pp. 140–157, 2006.
2007
W. J. Jones and Macpherson, E., “Molecular phylogeny of the East Pacific squat lobsters of the genus Munidopsis (decapoda: galatheidae) with the descriptions of seven new species”, Journal of Crustacean Biology, vol. 27, pp. 477–501, 2007.
2008
Y. - J. Won, Jones, W. J., and Vrijenhoek, R. C., “Absence of cospeciation between deep-sea mytilids and their thiotrophic endosymbionts”, Journal of Shellfish Research, vol. 27, pp. 129–138, 2008.
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