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Journal Article
D. Feng, Birgel, D., Peckmann, J., Roberts, H. H., Joye, S. B., Sassen, R., Liu, X. - L., Hinrichs, K. - U., and Chen, D., “Time integrated variation of sources of fluids and seepage dynamics archived in authigenic carbonates from Gulf of Mexico Gas Hydrate Seafloor Observatory”, Chemical Geology, vol. 385, pp. 129–139, 2014.
C. Johansen, Todd, A. C., and MacDonald, I. R., “Time series video analysis of bubble release processes at natural hydrocarbon seeps in the Northern Gulf of Mexico”, Marine and Petroleum Geology, vol. 82, pp. 21–34, 2017.
H. Johnson and Tunnicliffe, V., “Time-series measurements of hydrothermal activity on northern Juan De Fuca Ridge”, Geophysical Research Letters, vol. 12, pp. 685–688, 1985.
M. L. Holmes and Johnson, H. P., “Upper crustal densities derived from sea floor gravity measurements: Northern Juan De Fuca Ridge”, Geophysical Research Letters, vol. 20, pp. 1871–1874, 1993.
R. N. Peterson, Viso, R. F., MacDonald, I. R., and Joye, S. B., “On the utility of radium isotopes as tracers of hydrocarbon discharge”, Marine Chemistry, vol. 156, pp. 98–107, 2013.
C. R. Fisher, Childress, J. J., Arp, A. J., Brooks, J. M., Distel, D. L., Dugan, J. A., Felbeck, H., Fritz, L. W., Hessler, R. R., Johnson, K. S., Kennicutt, M. C., Lutz, R. A., Macko, S. A., Newton, A., Powell, M. A., Somero, G. N., and Soto, T., “Variation in the hydrothermal vent clam, Calyptogena magnifica, at Rose Garden vent on the Galapagos Spreading center”, Deep-Sea Research. Part A, Oceanographic Research Papers, vol. 35, pp. 1811–1832, 1988.
M. A. Tivey and Johnson, H. P., “Variations in oceanic crustal structure and the implications for the fine-scale magnetic anomaly signal”, Geophysical Research Letters, vol. 20, pp. 1879–1882, 1993.
C. G. Wheat, Jannasch, H. W., Kastner, M., Plant, J. N., DeCarlo, E. H., and Lebon, G., “Venting formation fluids from deep sea boreholes in a ridge flank setting: ODP Sites 1025 and 1026”, Geochemistry, Geophysics, Geosystems, vol. 5, p. Article no. Q08007, 2004.
P. Fryer, Gill, G. B., and Jackson, M. C., “Volcanologic and tectonic evolution of the Kasuga seamounts, northern Mariana Trough: Alvin submersible investigations”, Journal of Volcanology and Geothermal Research, vol. 79, pp. 277–311, 1997.
J. Jungclaus, Barton, R. J., and Encarnacao, L. M., “A web-based distributive aimulator for the Alvin deep submersible vehicle”, Computer Graphics Topics, vol. 13, pp. 21–22, 2001.
S. G. John, Rouxel, O. J., Craddock, P. R., Engwall, A. M., and Boyle, E. A., “Zinc stable isotopes in seafloor hydrothermal vent fluids and chimneys”, Earth and Planetary Science Letters, vol. 269, pp. 17–28, 2008.
Miscellaneous
B. L. Beard, Johnson, C. M., and Von Damm, K. L., “Iron isotope constraints on Fe cycling and mass balance in the oxygenated Earth”, Geochimica et Cosmochimica Acta, vol. 66. p. A58, 2002.
Thesis
M. V. Jakuba, “Modeling and control of an autonomous underwater vehicle with combined foil/thruster actuators”, Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution, Cambridge, MA and Woods Hole, MA, 2003.
M. V. Jakuba, “Stochastic mapping for chemical plume source localization with application to autonomous hydrothermal vent discovery”, Massachusetts Institutte of Technology and Woods Hole Oceanographic Institution, Cambridge, Mass. and Woods Hole, Mass., 2007.
H. F. Jensen, “Variable buoyancy system metric”, Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution, Cambridge, MA and Woods Hole, MA, 2009.

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